Design of RNA-targeting macrocyclic peptides

MJ Walker, G Varani - Methods in Enzymology, 2019 - Elsevier
Structure determination of peptide-RNA complexes produce atomic resolution … to target it
with our BIV-TAR mimetics even if this interaction is distinct from the TAR-Tat interactions in that

[HTML][HTML] Structure-based design of RNA-binding peptides

MJ Walker, G Varani - Methods in enzymology, 2019 - ncbi.nlm.nih.gov
Structure determination of peptide-RNA complexes produce atomic resolution … to target it
with our BIV-TAR mimetics even if this interaction is distinct from the TAR-Tat interactions in that

[HTML][HTML] RNA-Binding Macrocyclic Peptides

S Pal, P 't Hart - Frontiers in Molecular Biosciences, 2022 - frontiersin.org
… of cyclic peptides that target more complex tertiary folds of … Structural studies of this new
RRM in complex with the TARstructure of the peptide:RNA complex further revealed that the …

Targeting RNA Structures that Control Protein Synthesis and RNA Stability

MJ Walker - 2019 - digital.lib.washington.edu
… human disease, making them an unexploited target for … recognition elements for BIV-TAR
binding by sandwiching … (B) Structure of pre-miR21-L50 complex with nucleotides that make …

[图书][B] Use of Lab-Evolved Proteins to Guide Development of Inhibitors that Target HIV-1 TAR RNA

SS Chavali - 2021 - search.proquest.com
… -Tat interaction represents a viable target for functional cure therapy. Numerous studies have
determined the structures of HIV TAR in complex with BIV-Tat … strong peptideRNA binding …

Correlation in Domain Fluctuations Navigates Target Search of a Viral Peptide along RNA

S Prusty, R Sarkar, A Chakraborty… - The Journal of Physical …, 2021 - ACS Publications
… peptide along with the solution NMR structure of the BIV TARTat complex is shown in …
of the TAR RNA to generate the initial structure of the BIV TARTat complex for simulations. …

An ultra-high affinity ligand of HIV-1 TAR reveals the RNA structure recognized by P-TEFb

MD Shortridge, PT Wille, AN Jones… - Nucleic acids …, 2019 - academic.oup.com
… Elongation Complex (SEC) to the HIV promoter. Therefore, TAR has long been a target of …
not between closely related stem-loop structures such as the BIV TAR (28). We now report …

[HTML][HTML] Face-time with TAR: Portraits of an HIV-1 RNA with diverse modes of effector recognition relevant for drug discovery

SS Chavali, R Bonn-Breach, JE Wedekind - Journal of Biological Chemistry, 2019 - ASBMB
… recent successes in the identification of compounds that target the hepatitis C virus internal
… New structural details are used to model the TARTat–super-elongation complex (SEC) that

[HTML][HTML] Binding of hnRNP I–vRNA Regulates Sindbis Virus Structural Protein Expression to Promote Particle Infectivity

CE Westcott, S Qazi, AM Maiocco, S Mukhopadhyay… - Viruses, 2022 - mdpi.com
… The primary goal of this study was to determine whether the … RNA complexes in lysates
generated from HEK293 cells that … the native interaction site via the BIV-TAR/TAT system, we next …

Methods to identify and optimize small molecules interacting with RNA (SMIRNAs)

A Ursu, S Vézina-Dawod, MD Disney - Drug Discovery Today, 2019 - Elsevier
… Bovine Immunodeficiency Virus (BIV) TatTAR complex. A focused … confirmed the key residues
driving the peptide-RNA … well-characterized RNA targets, such as HIV-1 TAR, is currently …